PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308400.1
Common NameCsa_5G622830, LOC101206047
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 356aa    MW: 38458 Da    PI: 6.1717
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17262295134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Cucsa.308400.1 262 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 295
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-741352IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.53256292IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16256306IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15260319No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14260293IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.66E-14261310No hitNo description
PfamPF003202.5E-15262295IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIGNNFVDEI DCGSFFDHID DLLDFPVEDV DAGLPPAKGG DSANSFPTIW PTHSESLPGS  60
DSVFSANSNS DLSAELSVPY EDIVQLDWLA NFVEDSFCGE GLTMNKEEVK DLTHNNNQFQ  120
TSSPVSVLES SSSCSSDKTL QPRSPEPTVA TPGQQRGRAR SKRPRPATFS PRSPIIQRIS  180
PASSVTETTT PDQALQLVPK AASDTDNFAE SRPLVKLPKH GAGSGTQKIK NKKIKLSFSL  240
APPLEGGAGN QNLPSSQSVR KCMHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY  300
RPAASPTFIP SLHSNSHKKV LEMRNKTDEN TAAITISVQP ELIPNPNSAI SMDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142426.10.0PREDICTED: GATA transcription factor 8
RefseqXP_011655883.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A0A0KRL50.0A0A0A0KRL5_CUCSA; GATA transcription factor
STRINGXP_004142426.10.0(Cucumis sativus)
STRINGXP_004166767.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]