PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.306790.1

Common Name

Csa_3G740150, LOC101214866

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 772aa MW: 85827.4 Da PI: 6.6258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.306790.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.1e-08	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + Cucsa.306790.1 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-10	44	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-5	47	97	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.623	48	99	IPR017884	SANT domain
SMART	SM00717	2.3E-5	49	97	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-5	52	95	No hit	No description
Pfam	PF00249	9.4E-6	52	94	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MQTDLIVSSN SETHLQSETI IAHVGDQGIA ASTPDHVIEP LPAKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA 180 VSNQSRALGH DGRAVKLVLV DTQNIPKLGP RKTASRRNVN VGINRGNNGG YPTVLKPSRQ 240 RRKSEGGVSS AAYKKWEKAA IAGVSLVADA AEHLERTITN RDVLRDQNTL GKKSTDPAGS 300 PLLLLPPLQP NSLIDVASIK LKLQLFPVDD GTRRALESDK HNPYLELTLS TRKKISSVLE 360 HLSRKWGNSS AAHGELMLFP YSIQRKSLAD CQRWTQDSFE SAGDVYATIG RPQVFRLRYG 420 WCSNAEHESV ELQTSVPAYC IQDDHIMDAR DIEGRIVHAA SIDAQPVDFN KDEVGTLTKN 480 TSTPTAPCES ERCISARPND LLKSSDPVLN MSWDKKNAAD RTIIQRSDDV DDLKLSNGTS 540 LSAGEWADSL TNISIGDLLS GVSQDVDANC VDTPLAEGTQ CLQQIPFSCD SFDAAIAAHI 600 SRQQDKTVPQ PTLASHASSI WDAEETCDAF SFQKNPVTLQ EVPSSFTFSS LRGCKHVART 660 NSMGFSHMTE DFPRSESPIE DHIQEDLMDE CQSDPQITET KDIDELADIY WPDSLGPLDL 720 DLPSTNKYHN EELILGDSLS SLNRLIASSL DAFQNCSFFG LDKKESSAFN S*

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MQTDLIVSSN SETHLQSETI IAHVGDQGIA ASTPDHVIEP LPAKRPTRQW AAWTREEEES  60
FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA  180
VSNQSRALGH DGRAVKLVLV DTQNIPKLGP RKTASRRNVN VGINRGNNGG YPTVLKPSRQ  240
RRKSEGGVSS AAYKKWEKAA IAGVSLVADA AEHLERTITN RDVLRDQNTL GKKSTDPAGS  300
PLLLLPPLQP NSLIDVASIK LKLQLFPVDD GTRRALESDK HNPYLELTLS TRKKISSVLE  360
HLSRKWGNSS AAHGELMLFP YSIQRKSLAD CQRWTQDSFE SAGDVYATIG RPQVFRLRYG  420
WCSNAEHESV ELQTSVPAYC IQDDHIMDAR DIEGRIVHAA SIDAQPVDFN KDEVGTLTKN  480
TSTPTAPCES ERCISARPND LLKSSDPVLN MSWDKKNAAD RTIIQRSDDV DDLKLSNGTS  540
LSAGEWADSL TNISIGDLLS GVSQDVDANC VDTPLAEGTQ CLQQIPFSCD SFDAAIAAHI  600
SRQQDKTVPQ PTLASHASSI WDAEETCDAF SFQKNPVTLQ EVPSSFTFSS LRGCKHVART  660
NSMGFSHMTE DFPRSESPIE DHIQEDLMDE CQSDPQITET KDIDELADIY WPDSLGPLDL  720
DLPSTNKYHN EELILGDSLS SLNRLIASSL DAFQNCSFFG LDKKESSAFN S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651958.1	0.0	PREDICTED: TSL-kinase interacting protein 1 isoform X1
Refseq	XP_011651959.1	0.0	PREDICTED: TSL-kinase interacting protein 1 isoform X1
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A0A0LE12	0.0	A0A0A0LE12_CUCSA; Uncharacterized protein
STRING	XP_008442695.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9883	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1

Link Out ? help Back to Top
Phytozome	Cucsa.306790.1
Entrez Gene	101214866

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]