PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.306580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 28755.5 Da PI: 8.3781 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd +l v+++G + W++Ia+ g+ R++k+c+ rw++yl Cucsa.306580.1 14 RGPWLEEEDRRLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+r eE+e++++++k++G++ W++Ia+ ++ gRt++++k++w+++l Cucsa.306580.1 67 RDRINSEEEEIILKLHKKWGNK-WSRIAQWLP-GRTDNEIKNYWRSHL 112 567789****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.664 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 18.473 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 69 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-13 | 72 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-9 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MASQSALQTE RLRRGPWLEE EDRRLTIFVT RMGERKWDLI AKASGLERSG KSCRFRWLNY 60 LRPNLKRDRI NSEEEEIILK LHKKWGNKWS RIAQWLPGRT DNEIKNYWRS HLRKKFPIQL 120 EGNKVEQRKE DKVSLKKCGL LVSPIRHDHN ERKDIPSCNI SYNHFDFGFS NLAITSSPYE 180 IRVSNWISHQ LTNEKPEVND HHEDCNSLDF CFCYPNMNFA ERDDMTDHFW DSLASLWDME 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-26 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-26 | 4 | 116 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-26 | 4 | 116 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-157 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-157 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137980.1 | 1e-179 | PREDICTED: myb-related protein 340 | ||||
Swissprot | Q9SCP1 | 1e-50 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1S3B717 | 1e-165 | A0A1S3B717_CUCME; transcription factor MYB114-like | ||||
STRING | XP_004173801.1 | 1e-179 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 5e-49 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.306580.1 |
Publications ? help Back to Top | |||
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