PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.300780.1
Common NameCsa_3G510960, LOC101205848
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 274aa    MW: 30303.4 Da    PI: 8.624
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.300780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18122176256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Lee F++n++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cucsa.300780.1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTK 176
                     778899***********************************************98 PP
2HD-ZIP_I/II121.25.3e-39122210190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rlsk+q++lLEesF+++++L+p++K+ lar+L+l prqv+vWFqnrRARtk kq+E+d+e Lk+++++l++en+rL+kev+eL+ +
  Cucsa.300780.1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELK-A 210
                     69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17117179IPR009057Homeodomain-like
PROSITE profilePS5007117.232118178IPR001356Homeobox domain
SuperFamilySSF466892.48E-17120186IPR009057Homeodomain-like
SMARTSM003893.7E-14120182IPR001356Homeobox domain
PfamPF000461.5E-15122176IPR001356Homeobox domain
CDDcd000866.31E-17122179No hitNo description
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021831.2E-10178211IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.6E-25178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGFDDFSKTG LVLGLGLSEL ADDQRTTLKK KPAPCSSSSL DFEPCVLTLG FSGGGGDTHR  60
KVIDHVGPHH LYRQASPHSS AVCSSFSGKV KRERDLSSEE VELERACWRV SDEDDDVCNN  120
TRKKLRLSKQ QSALLEESFK QNSTLNPKQK QGLARQLNLL PRQVEVWFQN RRARTKVKQT  180
EVDCELLKKC CETLTDENRR LQKEVQELKA IKLAKPVYMQ MSGATLTICP SCERVGTGGH  240
GGVADGNSNP KPKFSMPPNP FFYNPFSNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126TRKKLRL
2170178RRARTKVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818570.0LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149840.20.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466049e-85HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0A0LBR70.0A0A0A0LBR7_CUCSA; Uncharacterized protein
STRINGXP_004149840.10.0(Cucumis sativus)
STRINGXP_004166355.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-78HD-ZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  6. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]