PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.300610.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 24809.2 Da PI: 5.1851 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.5 | 2.8e-18 | 69 | 116 | 12 | 59 |
EE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 12 qKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 q + + s++ +sYYrCtsa C+vkk+vers dp+vv++tYeg+H+h+ Cucsa.300610.4 69 QQQQQHSPTKQSYYRCTSAACNVKKRVERSFADPTVVVTTYEGQHTHP 116 5666789999*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.807 | 53 | 118 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-10 | 69 | 117 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-14 | 69 | 118 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-12 | 69 | 116 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-16 | 69 | 118 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEDYNNNNDD DQQQIIKIED TSTITDAGGG GDGGGRGGGG ATPNCSSSVS SASSDALNDD 60 EPPPPPPPQQ QQQHSPTKQS YYRCTSAACN VKKRVERSFA DPTVVVTTYE GQHTHPSPIL 120 SRSALAVAIP PPSFIPGAGG ECVGGVVAMP WLKPSNNDAH DGNTIPAMSH QYFQNSTYIT 180 AQNVAANYNR NNHIGAANAA GILQEKRFCN PNSSFLVDHG LLQDVVPPHM LKQE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | GGRGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984040 | 0.0 | GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651538.1 | 1e-113 | PREDICTED: probable WRKY transcription factor 68 isoform X1 | ||||
Refseq | XP_011651539.1 | 1e-113 | PREDICTED: probable WRKY transcription factor 68 isoform X1 | ||||
TrEMBL | E7CEY9 | 1e-113 | E7CEY9_CUCSA; WRKY protein | ||||
STRING | XP_004147997.1 | 1e-112 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62340.1 | 2e-21 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.300610.4 |