PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.300610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36113 Da PI: 6.4176 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.8 | 5.5e-34 | 157 | 214 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa C+vkk+vers dp+vv++tYeg+H+h+ Cucsa.300610.1 157 EDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFADPTVVVTTYEGQHTHP 214 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-34 | 141 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-29 | 148 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.95 | 151 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 156 | 215 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 157 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEDYNNNNDD DQQQIIKIED TSTITDAGGG GDGGGRGGGG GGVFSFSDNI IPNGLFDFCD 60 SDKCSVGFME LLGLNYNSEF TEAFNNPPAT PNCSSSVSSA SSDALNDDEP PPPPPPQQQQ 120 QHSPTKQLKG IKKRKEKEKE KKARFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY 180 RCTSAACNVK KRVERSFADP TVVVTTYEGQ HTHPSPILSR SALAVAIPPP SFIPGAGGEC 240 VGGVVAMPWL KPSNNDAHDG NTIPAMSHQY FQNSTYITAQ NVAANYNRNN HIGAANAAGI 300 LQEKRFCNPN SSFLVDHGLL QDVVPPHMLK QE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-27 | 146 | 216 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-27 | 146 | 216 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 41 | GGRGGGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984040 | 0.0 | GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651538.1 | 0.0 | PREDICTED: probable WRKY transcription factor 68 isoform X1 | ||||
Refseq | XP_011651539.1 | 0.0 | PREDICTED: probable WRKY transcription factor 68 isoform X1 | ||||
TrEMBL | E7CEY9 | 0.0 | E7CEY9_CUCSA; WRKY protein | ||||
STRING | XP_004147997.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-45 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.300610.1 |