PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.295080.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 278aa MW: 31709.5 Da PI: 8.8686

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.295080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	207.2	5.8e-64	92	251	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a + l+ ++ + + + + ++ +++ ++++ +++v++ Cucsa.295080.1 92 IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSLSWQDV-----QVPSYNLYGCNGADFQGDFGSSSKCNNNVNK- 180 579************************************************99995.....3444555566666666555554444444443. PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +p + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Cucsa.295080.1 181 -MEIRVPTTIPAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 251 .44555555665554489**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-69	93	251	IPR006780	YABBY protein
SuperFamily	SSF47095	7.59E-8	187	244	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.4E-4	199	245	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
ESFTVRSKKG IYSCKGLLYI LLTFLIWVSP KLKRQRHQRP SSSLLYYYFF FFFLSSHSSS 60 SSFLLLFTEK EKRSVVCLIN WFESMATTCL DIAPEQLCYI PCNFCNIVLA VSVPCSSLFD 120 IVTVRCGHCT NLWSVNMAAA FHSLSWQDVQ VPSYNLYGCN GADFQGDFGS SSKCNNNVNK 180 MEIRVPTTIP AEERVVNRPP EKRQRVPSAY NQFIKEEIQR IKASNPEISH REAFSTAAKN 240 WAHFPRIHFG LMLETNNQVK LDDGSERLMP RAALLNK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	35	KLKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN693120	1e-152	LN693120.1 Cucumis melo genomic scaffold, unassembled_sequence40639.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150030.1	1e-144	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	5e-80	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S4DUX7	1e-120	A0A1S4DUX7_CUCME; axial regulator YABBY 5-like
STRING	XP_004150030.1	1e-144	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-82	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.295080.1

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]