PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.285170.1 | ||||||||
Common Name | Csa_5G605000, LOC101206263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 39002.1 Da PI: 9.4586 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.1 | 5.4e-41 | 67 | 237 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Cucsa.285170.1 67 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsy 161 789******************************************************************99987777777777555556677778 PP TCP 89 ....................kaaksaakskksqksaasalnlakesr...........................akarararertrekmrikn 134 + ++nl ++s+ +k r+++ e+++e+ + ++ Cucsa.285170.1 162 fsptqfavrtrsdlwdrtnnH-----------------NHNLVDDSStflnfnssnyvnvfkqdqggidvvetgKKRRSEQSESSSENYMVQT 237 876655444444433322220.................2333333333444444445666666667888888878888888888887777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-40 | 72 | 204 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 73 | 127 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MIMDGENGIR RPNFPLQLLE KKKEEEEEQQ QHPCSSSANN GGTKTTTTIT TTPNSNLQSS 60 SSPKKPPPKR ATTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGST ISAPSHLRTS YFSPTQFAVR TRSDLWDRTN 180 NHNHNLVDDS STFLNFNSSN YVNVFKQDQG GIDVVETGKK RRSEQSESSS ENYMVQTSTG 240 SIPASQSSQL PATFWMVTNP TNQGSDQMWT FPSVGNSSML RGAGGGGGGG GGGGFHFMNL 300 PPPMALLPSG QQLGTGIGGG GGGPATDSHL GMLAALSAYR TTMPGLSVSE SPTRGVGGVT 360 SNNPDQS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655678.1 | 0.0 | PREDICTED: transcription factor TCP15 | ||||
TrEMBL | A0A0A0KVX2 | 0.0 | A0A0A0KVX2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004173627.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-48 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.285170.1 |
Entrez Gene | 101206263 |
Publications ? help Back to Top | |||
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