PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.284890.1
Common NameCsa_5G606310, LOC101217253
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 291aa    MW: 33174.5 Da    PI: 8.4094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.284890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.8e-5491341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++++++k++++ ++i+evdiyk++PwdLp+k++++e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s 
  Cucsa.284890.1   9 LPPGFRFHPTDEELIMFYLRNQATSKPCPV-SIIPEVDIYKFDPWDLPEKADSGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 101
                     79****************************.89***************99999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl
  Cucsa.284890.1 102 ASKYVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134
                     9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-667161IPR003441NAC domain
PROSITE profilePS5100561.2419161IPR003441NAC domain
PfamPF023651.7E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKKKTCTELP PGFRFHPTDE ELIMFYLRNQ ATSKPCPVSI IPEVDIYKFD PWDLPEKADS  60
GENEWYFFSP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYVGVKK ALVFYKGKPP  120
KGVKTDWIMH EYRLIESNKQ SMKQSGSMRL DDWVLCRIYK KRHSNKGLLE EKTEELAAQN  180
DMVEGNGQGQ QMMKFPRTFS ITHLLDLDYL GPISQLFNDS SSMNPTLGFQ NNTAAAAFTS  240
VGKIEEGELM PLDYSSSSTD FQVNHSNNFF NQPIFVNNPT NDWNAHGFSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-71516413168NO APICAL MERISTEM PROTEIN
1ut4_B4e-71516413168NO APICAL MERISTEM PROTEIN
1ut7_A4e-71516413168NO APICAL MERISTEM PROTEIN
1ut7_B4e-71516413168NO APICAL MERISTEM PROTEIN
3swm_A4e-71516416171NAC domain-containing protein 19
3swm_B4e-71516416171NAC domain-containing protein 19
3swm_C4e-71516416171NAC domain-containing protein 19
3swm_D4e-71516416171NAC domain-containing protein 19
3swp_A4e-71516416171NAC domain-containing protein 19
3swp_B4e-71516416171NAC domain-containing protein 19
3swp_C4e-71516416171NAC domain-containing protein 19
3swp_D4e-71516416171NAC domain-containing protein 19
4dul_A4e-71516413168NAC domain-containing protein 19
4dul_B4e-71516413168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135168.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BWV21e-120NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A0A0KSS10.0A0A0A0KSS1_CUCSA; Uncharacterized protein
STRINGXP_004172196.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-111NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  5. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]