PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283240.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 517aa    MW: 58420.9 Da    PI: 6.6148
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like635.6e-20219272155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W+++LH++F ea+++L Gs k  Pk il++m+ ++Ltl +v+SHLQk+++
  Cucsa.283240.1 219 KSRIVWNSKLHRKFTEALSKL-GSRKSSPKIILKMMDEPSLTLRQVASHLQKFKS 272
                     68*******************.9******************************86 PP
2Response_reg25.37.4e-10191261107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHT.TTS.EEEEEESTTTHHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireee.pkl.piivvtahgeeedaleal 90 
                     vl+vd ++  ++ + ++l++  + +v++++++++a++++ ek+   ++l++     ++m++l +l    + + p +    v++ + ++++a +a+
  Cucsa.283240.1  19 VLVVDHDQHSLQSIVSMLQSCSF-KVTTTEEADAAIKMVVEKKheaFNLVMANATSSNMNALSILH---QTGiPIIrALAVMSLEMDMKTAGRAI 109
                     89*********************.***************5555467********999999998865...444333303447888999******** PP

                     HTTESEEEESS--HHHH CS
    Response_reg  91 kaGakdflsKpfdpeel 107
                        +  fl+Kp+++e++
  Cucsa.283240.1 110 AEWGCYFLEKPISMEDI 126
                     999999******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-1115141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-1215141No hitNo description
PROSITE profilePS5011018.6818134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.19E-620126No hitNo description
SuperFamilySSF466891.97E-13216275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-19218276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17219272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEIGRSKGII PSFAKGIHVL VVDHDQHSLQ SIVSMLQSCS FKVTTTEEAD AAIKMVVEKK  60
HEAFNLVMAN ATSSNMNALS ILHQTGIPII RALAVMSLEM DMKTAGRAIA EWGCYFLEKP  120
ISMEDIELVW QIVYRKIRNP RAKNLGENAK LGKKFEIDGV LERIVNVRRE VEWKSLEEEE  180
KEKEKGKNGG KCRDQGEEKL NPLLKVEEKT NRNERTIKKS RIVWNSKLHR KFTEALSKLG  240
SRKSSPKIIL KMMDEPSLTL RQVASHLQKF KSQVKHLNKI TANDSPSSTS FVKNQPPQLP  300
PKRNTNILTQ QNSYITDHNL RHLQVPAASC LNNNPPTQLL PNSQDVFSPH LIMMNQNNSS  360
NSYRTTHPTT NDLQLKTYGG LSEGMNFNLV EGNHVFTDEL YTFESTLEGF VQTSHYSSSS  420
NFQHFPADED YYCSFFQDDG QLEFAQNLAG SCLDVDNNII TSMSGAHSAV IAGRSMNQNV  480
ALKELDDLLN NTEEDPMVYC CFDGEMNSFD IDQYSEX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655794.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A0A0KR710.0A0A0A0KR71_CUCSA; Uncharacterized protein
STRINGXP_008447014.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2482233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.16e-29pseudo-response regulator 6