PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.280670.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 637aa    MW: 72160.7 Da    PI: 8.6119
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.280670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.12.6e-15296347255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +r++W+ e  ++F +a+++LG  +k  Pk il++m+ ++Ltl +v+ HLQkY+ 
  Cucsa.280670.1 296 TRVVWNAERRRKFTDALNKLG--DKSRPKLILKMMNEPCLTLRQVANHLQKYKA 347
                     79******************5..7889*************************85 PP
2Response_reg53.61.3e-18551601107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd +p+ ++ l+++le++ y +v++++ ++ al +++ek   +Dl++  ++mp+md + +l  + + +  + +i++++  + + a++al  G
  Cucsa.280670.1  55 VLLVDHDPFSLKHLASLLEQQSY-NVTTTQLASIALSMIQEKGdrFDLVMANVSMPDMDSFSFLHVLLKMN--IAVIFMSSGMNLSVATKALAEG 146
                     89*********************.***************999889**********************8865..********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a  fl Kp+++ +l
  Cucsa.280670.1 147 ACYFLQKPISRGDL 160
                     *********99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-2451178No hitNo description
SuperFamilySSF521726.69E-2351176IPR011006CheY-like superfamily
SMARTSM004481.8E-1353164IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.02954168IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1555161IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.57E-1756167No hitNo description
Gene3DG3DSA:1.10.10.605.8E-16293349IPR009057Homeodomain-like
SuperFamilySSF466898.06E-10294348IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-13296347IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MERGGRKSKF KRKNAVHQCM YVTPRRLERE RRRKKTNGRR ADPVAVGGFA KNLHVLLVDH  60
DPFSLKHLAS LLEQQSYNVT TTQLASIALS MIQEKGDRFD LVMANVSMPD MDSFSFLHVL  120
LKMNIAVIFM SSGMNLSVAT KALAEGACYF LQKPISRGDL KYMWQHVYRW NRNITKQTYK  180
ANCIETAKPR KESVGIQITD AVVLSRSAAA VSYNNNCCIN YKPMENKEKD KSVQIGSHDS  240
LVGSFFGGKR LSDDIEGISR EKRVKYYSEP TKFGFSRIDE DHERRKEYYI ASDSRTRVVW  300
NAERRRKFTD ALNKLGDKSR PKLILKMMNE PCLTLRQVAN HLQKYKAQVE CFKRRRENKL  360
PCRREASKSN FSIRTQLPPL VQQHHETCRF TNGGLTSVFG GERFQLIAPK SLPNPRLPAS  420
NFINHDLTTL GHNFHHVGSN CDLVSYNVNK EVGLCLDNVQ SFQKEGGAFR TDNCGKFALI  480
GGGVQTTELN FSSVSKMTPE LASSHVFDET QFPDNLLDGV VQEVDMTALK IENQEEIHSM  540
SRDITVPDSF NLDNIFDGGQ ELPAASESRG NQQLADYAYL LDVLEEDPYN FVSDLNLSDV  600
DKYSEWLRNT VLENKSGPDS FISDNADAEN SPVENP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307ERRRKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655476.10.0PREDICTED: uncharacterized protein LOC101203501 isoform X1
TrEMBLA0A1S3CSX70.0A0A1S3CSX7_CUCME; uncharacterized protein LOC103504590 isoform X1
STRINGXP_004147143.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.12e-36pseudo-response regulator 6