PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.280660.1
Common NameCsa_5G576700, LOC101203274
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 263aa    MW: 29389.3 Da    PI: 8.3999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.280660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.94.5e-15174199126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd C+FaHg
  Cucsa.280660.1 174 FKTELCNKWQETGSCPYGDHCQFAHG 199
                     79***********************8 PP
2zf-CCCH18.92.7e-06212236125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  Cucsa.280660.1 212 YKTEVCRMVLA-GvVCPYGHRCHFRH 236
                     9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-20168206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-11170205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.493173201IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-9173200IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-12174199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-11207238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-8207241IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803211239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVNRHSLCLT QLREATEEAD ALRQENIHLR SINHELSKHL SLLIQASVQK QYGSSDQAPP  60
FNFAEGFRGL SLAEKGASSS AWEDISDESP TSVMEGGRVE GVEVERFSLP KSISVRSNGY  120
LKMAQTGTSQ GGKIRASSRP RTASPVKVTQ KVYVQGVKEE EKPLELEVYN QGMFKTELCN  180
KWQETGSCPY GDHCQFAHGI EELRPVIRHP RYKTEVCRMV LAGVVCPYGH RCHFRHALTD  240
QERLMGTLKP TCRTSTTPKL DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21174236466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151447.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1
SwissprotQ9C9F51e-82C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0A0KPN30.0A0A0A0KPN3_CUCSA; Uncharacterized protein
STRINGXP_004167744.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-82C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]