PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.272370.1

Common Name

Csa_4G664400, LOC105435329

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 415aa MW: 46979.9 Da PI: 6.6721

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.272370.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.7e-53	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp +k +e+ewyf+s rd+ky+tg r+nrat +gyWkatgkd+ev+s+ Cucsa.272370.1 18 LPPGFRFHPTDEELITFYLASKVFKGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 111 79***********************777.45***********8888899**********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrap+gekt+Wvmheyrl Cucsa.272370.1 112 sNGSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 145 78899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-63	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	18	167	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEQILSELNG EELNEQGLPP GFRFHPTDEE LITFYLASKV FKGSFCGVEI AEVDLNRCEP 60 WELPDVAKMG EREWYFYSLR DRKYPTGLRT NRATGAGYWK ATGKDREVYS ASNGSLLGMK 120 KTLVFYKGRA PRGEKTKWVM HEYRLDGDFS YRHACKEEWV ICRIFHKNGE KKNSMFQCQT 180 YLLESALSSS TTSNSLPPLL ETNPTTTLVE CQSQAAMQLQ LQAFQNPFQI RQPPENDLKR 240 FMSSVMSQSN LLSSSEQLHK SSISINPIIT NAANNNNNML YAPSPSILFK SLLSHQDSTV 300 LLKQQQQQHQ QQQFNKAADS SSFTTHNFDP AEAEANSNLM DIKKMMVPNA SPCSYHQHPL 360 FFETECNSPP PLPAHVSLHD TSTSISFNRP AYQTLLDPHI NILHAHGDSW PLDA*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEQILSELNG EELNEQGLPP GFRFHPTDEE LITFYLASKV FKGSFCGVEI AEVDLNRCEP  60
WELPDVAKMG EREWYFYSLR DRKYPTGLRT NRATGAGYWK ATGKDREVYS ASNGSLLGMK  120
KTLVFYKGRA PRGEKTKWVM HEYRLDGDFS YRHACKEEWV ICRIFHKNGE KKNSMFQCQT  180
YLLESALSSS TTSNSLPPLL ETNPTTTLVE CQSQAAMQLQ LQAFQNPFQI RQPPENDLKR  240
FMSSVMSQSN LLSSSEQLHK SSISINPIIT NAANNNNNML YAPSPSILFK SLLSHQDSTV  300
LLKQQQQQHQ QQQFNKAADS SSFTTHNFDP AEAEANSNLM DIKKMMVPNA SPCSYHQHPL  360
FFETECNSPP PLPAHVSLHD TSTSISFNRP AYQTLLDPHI NILHAHGDSW PLDA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-51	13	167	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-51	13	167	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-51	13	167	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-51	13	167	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-51	13	167	15	168	NAC domain-containing protein 19
3swm_B	8e-51	13	167	15	168	NAC domain-containing protein 19
3swm_C	8e-51	13	167	15	168	NAC domain-containing protein 19
3swm_D	8e-51	13	167	15	168	NAC domain-containing protein 19
3swp_A	8e-51	13	167	15	168	NAC domain-containing protein 19
3swp_B	8e-51	13	167	15	168	NAC domain-containing protein 19
3swp_C	8e-51	13	167	15	168	NAC domain-containing protein 19
3swp_D	8e-51	13	167	15	168	NAC domain-containing protein 19
4dul_A	7e-51	13	167	12	165	NAC domain-containing protein 19
4dul_B	7e-51	13	167	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654285.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_011654286.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0A0L1E7	0.0	A0A0A0L1E7_CUCSA; Uncharacterized protein
STRING	XP_004157114.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	3e-95	NAC family protein

Link Out ? help Back to Top
Phytozome	Cucsa.272370.1
Entrez Gene	105435329

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]