PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.260110.2

Common Name

Csa_3G116640, LOC101219379

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 307aa MW: 35016.9 Da PI: 8.8066

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.260110.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	2.9e-13	105	156	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P++ + ++ + a+i A++++k+L+ Cucsa.260110.2 105 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 156 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-15	96	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.77E-8	103	153	No hit	No description
PROSITE profile	PS50888	14.557	104	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-13	105	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-9	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MLQSVESQSF KEPNFQSLLK LQHLTKPWEG GVNKIQELVQ LFSSPINSET KDQNQPPKSD 60 RVFSECNQNQ GISQTQMTKA PPVIKERRKR KRSKPTKNKE EVECQRMTHI AVERNRRRQM 120 NDHLNVIKSL IPTSYVQRGD QASIIGGAID FVKELEQLLE SLEALRKERK GAEGECKGEQ 180 SEVRVASNRR IGEGVCAELR SEVAEIEVTM IQTHVNLKIR CPKRQDQLLK VIVALEDLRL 240 TVLHLNITSQ TAATMLYSFN LKIEDECKLE SEEQIAATVN EIFSFINNGR LVNEAKENFR 300 QYSGSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	RRKRKR
2	87	94	RKRKRSKP
3	105	116	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134273.1	0.0	PREDICTED: transcription factor bHLH67
Swissprot	O81037	7e-74	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A0A0L6W2	0.0	A0A0A0L6W2_CUCSA; Uncharacterized protein
STRING	XP_004134273.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.260110.2
Entrez Gene	101219379

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]