PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258270.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 306aa    MW: 34638.8 Da    PI: 5.8893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEdell++++++  g+ +W++ ++  g+ R++k+c++rw +yl
   Cucsa.258270.1 14 KGPWTSEEDELLINYIRENNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     79****************98888**********99************97 PP
2Myb_DNA-binding50.64.5e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   Cucsa.258270.1  68 RGPFTPEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-23565IPR009057Homeodomain-like
PROSITE profilePS5129414.631962IPR017930Myb domain
SuperFamilySSF466893.44E-2811109IPR009057Homeodomain-like
SMARTSM007171.8E-101364IPR001005SANT/Myb domain
PfamPF002492.0E-131462IPR001005SANT/Myb domain
CDDcd001671.10E-81662No hitNo description
PROSITE profilePS5129425.54263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2666117IPR009057Homeodomain-like
SMARTSM007174.6E-1567115IPR001005SANT/Myb domain
PfamPF002494.7E-1568113IPR001005SANT/Myb domain
CDDcd001675.14E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTSE EDELLINYIR ENNGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTPEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLCI  120
GIDPQTHEPF NSRCSSSTAP ASPATRHMAQ WESARLEAEA RLSRESSLFT PLLMERTTDS  180
DFFLQIWNSE VGESFRRCRD DKTTCQSLSP LSSSVKCESL FIVATHNRVD YTGSSAMESN  240
NENEETEYKN FQSMTDIVMS KSDSSSANEF EESSDSALGL LLDFPINNDM SFLEEDNIIT  300
QQHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121175108B-MYB
1h8a_C1e-261211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133870.10.0PREDICTED: transcription repressor MYB6
SwissprotQ9M2D91e-122MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S4DT660.0A0A1S4DT66_CUCME; transcription repressor MYB6
STRINGXP_004155820.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-119myb domain protein 17