PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.253860.1
Common NameCsa_3G150180, LOC101212196
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 789aa    MW: 90617.8 Da    PI: 8.0731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.253860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.8e-2070145190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +YA+++GF+vr+ + ++s+++g +t+r+fvCskeg++ +              +rtgC a ++v++++++kw+++ ++++HnH+l 
  Cucsa.253860.1  70 NFYTSYAQRAGFKVRIGQLYRSRTDGAVTSRRFVCSKEGFQLS--------------SRTGCPAVIRVQRRDSEKWVIDLFHKDHNHHLE 145
                     6***************************************876..............589***************************996 PP
2FAR166.28.7e-21225301191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fYn+YA ++GF++r+ +  +sk++g+it+r+fvCskeg+++++              r gC a +++k++++g+w+v++ +++HnH+l p
  Cucsa.253860.1 225 QFYNAYAANAGFRIRIGQLFRSKNDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRHESGRWVVDRHKKDHNHDLEP 301
                     6***************************************9994..............789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1670145IPR004330FAR1 DNA binding domain
PfamPF031011.6E-16225301IPR004330FAR1 DNA binding domain
PfamPF105511.4E-27400492IPR018289MULE transposase domain
PROSITE profilePS5096610.361662710IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-8685712IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-8685707IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDKLLGANLT NVTSSDTDLN NEQCENAMIV KAYPIDMVRA TDAVDGENAR NCMLEPFVGQ  60
EFDSADAALN FYTSYAQRAG FKVRIGQLYR SRTDGAVTSR RFVCSKEGFQ LSSRTGCPAV  120
IRVQRRDSEK WVIDLFHKDH NHHLEHDGGE TPPPVIQVKA PRSAKLAVNV SHRRKVHLFK  180
DVEDAFSCPS GFINSKHLNE IGNVILRKGE PCVGLEFNSA NEAYQFYNAY AANAGFRIRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRL GCGAFMRIKR HESGRWVVDR HKKDHNHDLE  300
PQPEAQKRNL IASKRFAGEL NCGFQGKEPV NLNNGLVMKR TRDNKIGSDW YPGLFEYFQS  360
KQAEDTGFFY AVEVENSNCM SVFWADGRSR FSCSQFGDTI VLDTSYRKNA HAVPFATFIG  420
VNHHKQPVLL ACALLADESV ESFSWLFQTW LRAMSGCHPV SIIADQDKAV QQAVAQVFPR  480
TLHRFSSWQI REKEQGGLAM LDENFRFEYE KCIYQSQTAE EFDVSWNTLI GKYGLKENAW  540
LKEMYIKRNN WVPLFLRGTF FAGILATDNF ESFFGTPFNA QTPVEEFISR YEIGLERRRD  600
EERKESLNSL NLQGFLQTKE PVEEQCLRLY THAVFKVFQK ELLNCYRYLG FKIYEEVALS  660
RYLVRRCEND DEKCIVTVIS TNLTVNCSCK MFEYEGILCR HILRVFQILG ISEIPPRYIL  720
HRWTRNAEYG TLQDMDSDGG PQELKTVMLW SLREAACKYI EAGATSLEKY KLAYEIMREG  780
GRKLRWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134160.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A0A0L5P50.0A0A0A0L5P5_CUCSA; Uncharacterized protein
STRINGXP_008438740.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  5. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]