PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.251110.1

Common Name

Csa_3G179190, LOC101211292

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 279aa MW: 29341.4 Da PI: 10.554

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.251110.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115	1e-35	17	121	3	68
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt Cucsa.251110.1 17 QTKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipttsparpngeiseap 111 5799***********************************************************55555555555555444222222222222222 PP TCP 66 .......sss 68 ++s Cucsa.251110.1 112 rkrrrkgTNS 121 2222221111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-28	22	105	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.545	22	76	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MPPLTLSQVP STTLAKQTKR PSKDRHTKVE GRGRRIRMPA ACAARIFQLT RELDHKSDGE 60 TIRWLLEHAE PAIIEATGTG TVPAIAVSVG GTLKIPTTSP ARPNGEISEA PRKRRRKGTN 120 SESNDCNDQA SVSSGLTPIA PMAAYGAGLV PFWGSAGGVT EPFFMVPGTS NNHQPQLWAV 180 PARPLSNLVS SMNPGLQFGG VVPVLTRAVS NGSSGLESGS SPAMVSASLI PGTVSAPAST 240 SGSTQMLRDF SLEIYEKKEL EFMGRRSPAK SQTPCSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	115	RKRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150306.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	1e-62	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A0A0L8J7	0.0	A0A0A0L8J7_CUCSA; Uncharacterized protein
STRING	XP_004150306.1	0.0	(Cucumis sativus)
STRING	XP_004170748.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-63	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.251110.1
Entrez Gene	101211292

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]