PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.242870.1

Common Name

Csa_3G810480, LOC101204923

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 520aa MW: 58420.7 Da PI: 6.9891

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.242870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.2e-10	226	264	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le +L++ + Cucsa.242870.1 226 KTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQ 264 7789***********************976555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.3E-9	219	268	No hit	No description
SMART	SM00338	1.0E-6	222	285	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.9E-8	223	268	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	224	268	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-7	226	269	No hit	No description
CDD	cd14708	2.98E-21	226	275	No hit	No description
PROSITE pattern	PS00036	0	229	244	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-31	319	393	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MASSNIKNSS IIIQQEEEEE KQQQLHHHHH HYHQQQPQFL QNPSFVIPSN SKNSSLFNFQ 60 NPNFSDHHQH HPHQLPFSMN LPSISSNFLS KDGGGDDLGE LDQALFLYLD GQEPSSTTTQ 120 DQRQSSGMRP PTLNIFPSQP MHVDSLPIKG NTTLINHGGD SKIKASEPSK ELANQRSNGG 180 AIASAPAPTQ TTTTTEPHPK PPKREPNNKG LTSSSEQEGP KTPDPKTLRR LAQNREAARK 240 SRLRKKAYVQ QLEMSRIKLT QLEQELQRAR NQGMFLGGGA AILGGPDQGL PSGFHNLSSD 300 AAVFDIEYGR WQEEHHRLMC ELRAAVQEHL PENELRLYVD SCLAHYDEVL NLKMMVAKSD 360 IFHLVSGMWK TPAERCFMWM GDFRPSELIK IIMGQIEPLT EHQILNICAL QQSTQESEEA 420 LSQGLEALNQ SLSDTITSDS LSSPPNMANY MGQMTLAINK LSTLEGFVRQ ADNLRHQTVH 480 RLQQMLTTRQ AARCLLAIAE YFHRLRALSS LWLARPRQD*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MASSNIKNSS IIIQQEEEEE KQQQLHHHHH HYHQQQPQFL QNPSFVIPSN SKNSSLFNFQ  60
NPNFSDHHQH HPHQLPFSMN LPSISSNFLS KDGGGDDLGE LDQALFLYLD GQEPSSTTTQ  120
DQRQSSGMRP PTLNIFPSQP MHVDSLPIKG NTTLINHGGD SKIKASEPSK ELANQRSNGG  180
AIASAPAPTQ TTTTTEPHPK PPKREPNNKG LTSSSEQEGP KTPDPKTLRR LAQNREAARK  240
SRLRKKAYVQ QLEMSRIKLT QLEQELQRAR NQGMFLGGGA AILGGPDQGL PSGFHNLSSD  300
AAVFDIEYGR WQEEHHRLMC ELRAAVQEHL PENELRLYVD SCLAHYDEVL NLKMMVAKSD  360
IFHLVSGMWK TPAERCFMWM GDFRPSELIK IIMGQIEPLT EHQILNICAL QQSTQESEEA  420
LSQGLEALNQ SLSDTITSDS LSSPPNMANY MGQMTLAINK LSTLEGFVRQ ADNLRHQTVH  480
RLQQMLTTRQ AARCLLAIAE YFHRLRALSS LWLARPRQD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-141	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-141	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652107.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A0A0LBW4	0.0	A0A0A0LBW4_CUCSA; Uncharacterized protein
STRING	XP_008443081.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4731	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-158	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.242870.1
Entrez Gene	101204923

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]