PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.240980.3

Common Name

Csa_3G775260, LOC101210630

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 539aa MW: 59382.2 Da PI: 6.9675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.240980.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.7	5e-08	184	246	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke +r rr NRe+Ar +R++a +eeL++k++ L eN+ Lk e e ke+++l++ + Cucsa.240980.3 184 EKEERRIRRILANRESARQTIRRRQALCEELTRKAADLAWENENLKREKEVALKEYQSLETTN 246 78999****************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-11	184	248	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	184	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.898	186	249	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-5	188	254	No hit	No description
SuperFamily	SSF57959	2.06E-5	188	241	No hit	No description
CDD	cd14702	1.68E-12	189	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA 60 EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE 120 DRGVVKHQPS EKECTIQSQP EPETTGEVTK MDKEAESSKV SPACTTSYQF FGCRRSRRTL 180 TEAEKEERRI RRILANRESA RQTIRRRQAL CEELTRKAAD LAWENENLKR EKEVALKEYQ 240 SLETTNKELK EQLAEAVKPK VEEIPGNHRS SHVQMPPLPT NCPLFLFSRL PYFWPSVVQS 300 TSSYHELPNV VVVPSSINPP ANNNASVSGS SQTQENFTNG TGSRAPLCIL PPYSWLLPHH 360 DFRNQQSPQI WFPAGNDQEG VYSKSQNSAI TSKDVRAESR HSSLPSAEEE NEAPDLNEAP 420 SLDESSNPKD DTQNTVGVAV EGFDTNARAP VRKVLSPVRL ECIEPSSAAT LDNWNEDDHG 480 VSSRTCDDLC YFAERRHEPE VVPCKKTVDA MAATEARRRR KELTKLKNLY ARQCRMQS*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA  60
EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE  120
DRGVVKHQPS EKECTIQSQP EPETTGEVTK MDKEAESSKV SPACTTSYQF FGCRRSRRTL  180
TEAEKEERRI RRILANRESA RQTIRRRQAL CEELTRKAAD LAWENENLKR EKEVALKEYQ  240
SLETTNKELK EQLAEAVKPK VEEIPGNHRS SHVQMPPLPT NCPLFLFSRL PYFWPSVVQS  300
TSSYHELPNV VVVPSSINPP ANNNASVSGS SQTQENFTNG TGSRAPLCIL PPYSWLLPHH  360
DFRNQQSPQI WFPAGNDQEG VYSKSQNSAI TSKDVRAESR HSSLPSAEEE NEAPDLNEAP  420
SLDESSNPKD DTQNTVGVAV EGFDTNARAP VRKVLSPVRL ECIEPSSAAT LDNWNEDDHG  480
VSSRTCDDLC YFAERRHEPE VVPCKKTVDA MAATEARRRR KELTKLKNLY ARQCRMQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	521	RRRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652006.1	0.0	PREDICTED: uncharacterized protein LOC101210630 isoform X3
TrEMBL	A0A0A0LBD4	0.0	A0A0A0LBD4_CUCSA; Uncharacterized protein
STRING	XP_004161242.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	6e-51	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.240980.3
Entrez Gene	101210630

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]