PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.232630.1
Common NameCsa_2G360620, LOC101203523
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 184aa    MW: 21150.9 Da    PI: 10.2212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.232630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-18954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++I+r++  gR++k+c++rw + 
   Cucsa.232630.1  9 KGPWSAEEDRILTQLVDRYGARNWSLISRYIK-GRSGKSCRLRWCNQ 54
                     79*****************************9.***********985 PP
2Myb_DNA-binding54.52.7e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
   Cucsa.232630.1  63 PFSPTEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 105
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.466459IPR017930Myb domain
SuperFamilySSF466892.12E-316102IPR009057Homeodomain-like
SMARTSM007178.5E-16857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241062IPR009057Homeodomain-like
CDDcd001674.44E-141153No hitNo description
PfamPF139211.2E-171270No hitNo description
SMARTSM007171.9E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129420.41361110IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2363109IPR009057Homeodomain-like
CDDcd001677.42E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
GLRRPEKIKG PWSAEEDRIL TQLVDRYGAR NWSLISRYIK GRSGKSCRLR WCNQLSPNVE  60
HRPFSPTEDE TILAAHARFG NRWATIARLL PGRTDNAVKN HWNSTLKRRA REQQHHQQLV  120
MDGITPECHG ITPPGIGGVR TTAAEERRVE SFPAGFWDAM RDVIAREVRE YMTTTFMENP  180
EFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-4151103108B-MYB
1h88_C1e-40511054159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-40511054159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152727.11e-128PREDICTED: transcription factor MYB44-like
SwissprotQ9SN124e-54MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0A0LKY31e-127A0A0A0LKY3_CUCSA; Uncharacterized protein
STRINGXP_004169452.11e-128(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-56myb domain protein 77
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]