PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.228000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26320.4 Da PI: 8.6759 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Cucsa.228000.1 14 KGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.5 | 3.7e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+++++++++lG++ W++Ia++++ gRt++++k++w+++ Cucsa.228000.1 67 RGNFTAEEDQIIINLHTLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.987 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.38 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRSPCCEKQ HTNKGAWTKE EDQRLINYIQ IHGDGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TAEEDQIIIN LHTLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLA NNSSSSTGDF DRRREDSNSN SSSNSCLTTE VEENPPSNLN LELSIGLHPH 180 NQITKNTNPK GDDHQEAPVL FKFCSPQTEL ETQNFSSTPH MFRYYTPSPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 0.0 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147356.2 | 1e-173 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | P81393 | 4e-84 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | P81395 | 8e-84 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A1S3CCV9 | 1e-156 | A0A1S3CCV9_CUCME; myb-related protein 330-like | ||||
STRING | XP_008460839.1 | 1e-156 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-85 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.228000.1 |
Publications ? help Back to Top | |||
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