PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.213500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27736.3 Da PI: 7.0193 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl Cucsa.213500.1 10 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Cucsa.213500.1 63 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.204 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.143 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 65 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-11 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGIQEESIRK GPWTEQEDFQ LVCFVGLFGD RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG 60 LKRGKMTPHE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNFWRTHMRK VAQEKKKKDV 120 VVVSPSTSST IDSVPTTIEI GEESFYDSGG NPSEEQKGYC YTMDDIWKDI EDQSTNVMKP 180 LCDDQSYGNF VSCGPVVSPL WEYGQYSPWK TVEEDNKLYA AAGMNSNIYE HGEGVVLITQ 240 N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 10 | 110 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681926 | 0.0 | LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151659.1 | 0.0 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 1e-82 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A1S3C5C2 | 1e-165 | A0A1S3C5C2_CUCME; transcription factor MYB59-like | ||||
STRING | XP_004151659.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-80 | myb domain protein 59 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.213500.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|