PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.204920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 264aa MW: 29746.6 Da PI: 7.1131 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.7 | 2.4e-33 | 150 | 207 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts C+vkk+ver+ +dp++v++tYeg+H+h+ Cucsa.204920.1 150 EDGYRWRKYGQKAVKNSPHPRSYYRCTSVACNVKKRVERCLQDPSIVVTTYEGQHTHP 207 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-35 | 135 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 141 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.387 | 144 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 149 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-26 | 150 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
FYIFPLLMEE VVAADSLRYP FLDASDSKSC LGTFMELLEV DQHFSSQFDV FETSSPSLSS 60 SLISNPENLE IWNQWPTTPN YSSSISSTSS EIVNGELTTE PNLEGGEQKQ DQQPTVKADK 120 QLKTKKRSPK KKGAEPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPHPR SYYRCTSVAC 180 NVKKRVERCL QDPSIVVTTY EGQHTHPSPI MARFTMLAKI FDPPQVSIIT LGIPRNSISD 240 YMGSERIGFD TMNMEGGLIR HGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 133 | 209 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 133 | 209 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984037 | 0.0 | GU984037.1 Cucumis sativus WRKY protein (WRKY52) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267684.1 | 1e-129 | probable WRKY transcription factor 68-like | ||||
TrEMBL | E7CEY6 | 1e-128 | E7CEY6_CUCSA; WRKY protein | ||||
STRING | XP_004135983.1 | 1e-129 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 6e-46 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.204920.1 |