PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.198920.1 | ||||||||
Common Name | Csa_1G021940, LOC101217344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 33313.1 Da PI: 7.4134 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.8e-10 | 8 | 60 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 WT+eEd+ + +a++ + g+ W++Ia++++ + +++k ++q++ Cucsa.198920.1 8 WTKEEDKAFENAIATHWGEelegskgseeMWEKIASMVP-SKNMEDLKQHYQML 60 ****************999********************.************86 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 142 | 186 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Cucsa.198920.1 142 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 186 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.7E-6 | 4 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-7 | 7 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 7 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-8 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.771 | 8 | 61 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.80E-8 | 8 | 61 | No hit | No description |
PROSITE profile | PS51294 | 16.873 | 135 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 137 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-17 | 139 | 189 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-10 | 139 | 189 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 140 | 185 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-11 | 142 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 142 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSTGSAVWTK EEDKAFENAI ATHWGEELEG SKGSEEMWEK IASMVPSKNM EDLKQHYQML 60 VDDVGAIEAG QIPIPNYASS VGEETASTKE KDHHLHPHGS SDSNKRPNSG FGSGFSGLSH 120 DSSAHATKGG SRSEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNF VISRTPTQVA 180 SHAQKYFIRL NSMNRDRRRS SIHDITSVNN GGGGDVMSHQ APITGHQTNG TNQSNPPALG 240 PPGKHRPQQH LPGIGMYGAP VGQPVAAPPG HMASAVGTPV MLPQGIHPHP PYVMPVAYPM 300 APPPMHQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00191 | DAP | Transfer from AT1G49010 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138233.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | B8A9B2 | 3e-81 | MYBS1_ORYSI; Transcription factor MYBS1 | ||||
Swissprot | Q8LH59 | 3e-81 | MYBS1_ORYSJ; Transcription factor MYBS1 | ||||
TrEMBL | A0A0A0LS09 | 0.0 | A0A0A0LS09_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154922.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10694 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-68 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.198920.1 |
Entrez Gene | 101217344 |
Publications ? help Back to Top | |||
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