PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.197670.1 | ||||||||
Common Name | Csa_1G009700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34668.5 Da PI: 9.4904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Cucsa.197670.1 15 KGPWTPEEDIILVSYIHQHGPGNWRSVPNNTGLLRCSKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l Cucsa.197670.1 68 RGGFSDDEENMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.512 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.35E-11 | 17 | 62 | No hit | No description |
SMART | SM00717 | 4.6E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.974 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRPPCCSQT IAVKKGPWTP EEDIILVSYI HQHGPGNWRS VPNNTGLLRC SKSCRLRWTN 60 YLRPGIKRGG FSDDEENMIV HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKAQIR 120 GQWERRLQTD IQTAKQALRE ALSLTTKKDF IQNKLLLLSS SPPNKNNNKQ FHISSSSSSP 180 STSSSSSSST YVSNAENIAE LLKNWTKNSP KKAMARSRNS ESSSSCQNNN NNNNTNCSNL 240 WVEEEISYYS NNNNNNVQEG GVPFNLLEKW LFDEAAPTPQ YHPQYQNDHF LNLSLQDSQT 300 PFSFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-155 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-155 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453202.1 | 1e-161 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-92 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0A0LUH3 | 0.0 | A0A0A0LUH3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138300.1 | 1e-180 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 6e-84 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.197670.1 |
Publications ? help Back to Top | |||
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