PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.197410.1 | ||||||||
Common Name | Csa_1G008430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33380.8 Da PI: 9.8249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ WT+eEd +++ +v ++G+ +W++ +++ g++R++k+c++rw +yl Cucsa.197410.1 14 RDLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNYL 61 567*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.8e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T +E+el++++++ G++ W+ Ia+ ++ gRt++++k++w++ Cucsa.197410.1 68 QNFTSQEEELIIRLHAAIGSR-WAIIAQQLP-GRTDNDVKNYWNT 110 79*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.498 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 15 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-9 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 17 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.064 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVRIPSCDKL NLKRDLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTNY 60 LRPDLKHQNF TSQEEELIIR LHAAIGSRWA IIAQQLPGRT DNDVKNYWNT KLRRKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPRSTKRIG SLSREMKTSA NMKPEHHSNS AQGLVDLLTP 180 SMLLPETVPV MDKSMNDNVH QLNNNHPLNL LAQLQAMQRV TEASHCTFNE QIQPHFYTQS 240 YLPSSSSSSS STTTVTCRNT SSTFSWQDFL LEDAFLPSEP REHENKTRYQ KKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 11 | 117 | 4 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453162.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A0A0LP09 | 0.0 | A0A0A0LP09_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138294.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004155070.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 7e-70 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.197410.1 |
Publications ? help Back to Top | |||
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