PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.195210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 725aa MW: 79437.2 Da PI: 6.8793 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 302 | 322 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cucsa.195210.1 302 PCPDFRK-GACRRGDMCEYAHG 322 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.51E-16 | 38 | 160 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.40E-14 | 79 | 158 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.0E-17 | 79 | 159 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.5E-10 | 80 | 149 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.228 | 80 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.024 | 80 | 110 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.4E-5 | 81 | 96 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.155 | 115 | 150 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.6E-4 | 115 | 147 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.4E-5 | 134 | 148 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 297 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-5 | 302 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 330 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 52 | 332 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MCGGPEKSNS SSTTTASSPN PKDMNHLTVD CEDSFYSLLE LVSDNDAEGF KRLMQSDLFS 60 LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SAGTDKSTAL 120 HCATSSGSVN AVDIVDLLLS AGADPNSKDV NGDRPVDVIF IHPKLQKQNT RFKLEELLNS 180 HSNGSMDVSC LHLSIKTPNS ESPPLSSSLE DEFPSPPKSI SSPKFTDGFG NSAKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSMSA LSPSPFTQSM SPSSNGVSHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNA LPDFENQPRI LNDMNCFSQP 480 RPSAVSVSRS GWTQTLTPNN LEELFSSEIS LSPRFSDPAA NVFSPTRKST MLNQFQQQQQ 540 NMLSPINTSI MSPKNVDHHL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQHLR 600 TLSSRELGSN IPSSLIGSPV NSLPKWGSPN GKVDWSVGKN ELGQLRRSSS FEMGNNGEEP 660 DLSWVQSLVK ESPPEMLKEK LAVSGMGTAA SGEGLTTSKS QLESTDHSVI GAWLEQMQLD 720 QLVV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681835 | 0.0 | LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149598.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S3CFE0 | 0.0 | A0A1S3CFE0_CUCME; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_004172112.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.195210.1 |
Publications ? help Back to Top | |||
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