PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.193930.1
Common NameCsa_2G138780, LOC101206365
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 401aa    MW: 44278.4 Da    PI: 7.2558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.193930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18230279356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta eAa a++ a+  l+ge
  Cucsa.193930.1 230 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAVEAAVAYDTAAYMLRGE 279
                     8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-31228288No hitNo description
Gene3DG3DSA:3.30.730.101.4E-30229288IPR001471AP2/ERF domain
PROSITE profilePS5103221.614229286IPR001471AP2/ERF domain
SMARTSM003802.9E-34229292IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22229287IPR016177DNA-binding domain
PfamPF008471.2E-11230279IPR001471AP2/ERF domain
PRINTSPR003678.4E-10230241IPR001471AP2/ERF domain
PRINTSPR003678.4E-10252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEDHFQFIEQ QKPIIQKDFS SSSLQQFVSG SYFYGDPTLW GSILRPPRSQ NCGFNGNIDQ  60
SKSPSSSSSS STPNSPSSTS SSLFSTEKSE ISGGNLIDNI HGIESNLHPN GQAFVPLNFL  120
ETFPKQESES LSPSPPLFQS RIDSTNLTLF LQEPTIVDPS PQNPFQIHSQ TGLQWLKNTQ  180
NQNRSAAIVA GAANNYSDFW LGATKTQPMK QIGRKQGNQK TESSAVGKLF RGVRQRHWGK  240
WVAEIRLPRN RTRVWLGTFD TAVEAAVAYD TAAYMLRGEF AHLNFPDQKH RLKSNSLNRT  300
TAALLEAKLQ AITQGNSGRK KSVAGTVSTI DCSEKELLEG DSKVLDMRKK ASENVCGGSE  360
TGEMKRNEDG NLEIEQHVQL SRMPSLDMDM IWDALLVSDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19225286163ATERF1
3gcc_A5e-19225286163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139008.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A0A0LKA80.0A0A0A0LKA8_CUCSA; Uncharacterized protein
STRINGXP_004174093.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-59ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]