PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.192960.1 | ||||||||
Common Name | Csa_5G140460, LOC101215465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 34248.8 Da PI: 8.7518 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.4e-12 | 51 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Cucsa.192960.1 51 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 95 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 46 | 100 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-18 | 49 | 98 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 49 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-10 | 51 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-7 | 53 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVSNNPNPSE GFYLDPSGMA LPGLGPFATS MAASEDLSKK IRKPYTITKS RESWTEPEHD 60 KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KTGGGEHLPP PRPKRKASHP 120 YPQKASKNVA MPSQVPGSLQ STSPPVESGY TIRPDSSSIL TCPGPAGAVP SWTVNSVQPL 180 NSAQVPTTAN NCCSSTESPS KARPLVETID QGSNNHSLRV LPDFSQVYRF IGSVFDPNAS 240 GHLQKLKRMD PIDVETVLLL MRNLSINLIS PDFEDHKKLL SSYEIDSGPI RHGDMDKPIY 300 IDDHKSNLVS N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 5e-85 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 5e-85 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145900.1 | 0.0 | PREDICTED: protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 1e-128 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0A0KJM4 | 0.0 | A0A0A0KJM4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145900.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004160358.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-130 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.192960.1 |
Entrez Gene | 101215465 |
Publications ? help Back to Top | |||
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