PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.182020.1 | ||||||||
Common Name | Csa_1G569510, LOC101208615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YB | ||||||||
Protein Properties | Length: 124aa MW: 14113.8 Da PI: 6.5184 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 134.6 | 3.1e-42 | 12 | 100 | 7 | 95 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +lPianv rimkk++P+++kisk+ak+ +qec+ efisfvtsea+++cq+e+r+t+ngdd++wa+++lG+++y+e+ +++l ++re+e+ Cucsa.182020.1 12 ELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER 100 69*************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-39 | 7 | 115 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.43E-31 | 12 | 114 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.7E-26 | 12 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.8E-12 | 40 | 58 | No hit | No description |
PRINTS | PR00615 | 7.8E-12 | 59 | 77 | No hit | No description |
PRINTS | PR00615 | 7.8E-12 | 78 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MENHHNGDEF LELPIANVER IMKKIIPQKG KISKEAKKKM QECANEFISF VTSEAAQRCQ 60 NENRRTLNGD DIYWAFGSLG LDNYAEASSK FLLNFREVER IKVDEKHKSK DNHGEIGETS 120 SPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-32 | 13 | 97 | 8 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-32 | 13 | 97 | 8 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681806 | 1e-119 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. | |||
GenBank | LN713256 | 1e-119 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135780.1 | 1e-87 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O04027 | 2e-39 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A0A0LW12 | 3e-86 | A0A0A0LW12_CUCSA; Uncharacterized protein | ||||
STRING | XP_004135780.1 | 4e-87 | (Cucumis sativus) | ||||
STRING | XP_004157294.1 | 4e-87 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 9e-42 | nuclear factor Y, subunit B4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.182020.1 |
Entrez Gene | 101208615 |
Publications ? help Back to Top | |||
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