PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.175460.4 | ||||||||
Common Name | Csa_3G734230, LOC101203548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 551aa MW: 61164.4 Da PI: 8.5276 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+++ R++ qc +rwqk+l Cucsa.175460.4 59 KGGWTPQEDETLRNAVAAFKGKNWKKIAEYFH-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.1 | 1.2e-19 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W++Ia+ ++ gR +kqc++rw+++l Cucsa.175460.4 111 KGPWTQEEDDKIIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 56.7 | 5.7e-18 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l da++++G++ W+ Iar ++ gRt++ +k++w++ Cucsa.175460.4 163 KDAWTLEEELALMDAHRLHGNK-WAEIARVLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.625 | 54 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 59 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.95E-15 | 60 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 61 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-11 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 33.631 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-32 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-18 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-19 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.04E-16 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-28 | 118 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.886 | 162 | 212 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 162 | 210 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.53E-12 | 165 | 208 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 165 | 212 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MEEAKQEECC LENKQSTAAT SSSVSEGSGS ATAKSPWMCS PASTSPSHRR TSGPIRRAKG 60 GWTPQEDETL RNAVAAFKGK NWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMDAHRL 180 HGNKWAEIAR VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVAKNSSQ NGARDTTKTP 240 PAKRFPPYSS KGSDSTAQTS SGNTDLYKLD ESCKDQIESS APPDEDMVAS TSGVLNESAN 300 SRHVKRWVGP SNIMDPRCRK SGTARKNGTI THGEAENDIG KFDEDKILRT PSRFESPKYG 360 SLCYEPPQLE TSIPVDSELL SMYLLETNNN SITSPIGIFT PPCVKTRNLS IHSPESILRI 420 AARSFPSTPS ILRKRKTETQ TCLPLKEMQD VESETVKDVS CEAGHDEILN NSDSRLGSPN 480 GSLCDSPSPS NDHSPTRSNS KAFNASPPYR LTSKRTAISR SVEKQLEFAF DKEKNNHTIK 540 SLESDEISSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651895.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011651896.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q6R032 | 1e-158 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A0A0LA60 | 0.0 | A0A0A0LA60_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137766.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-152 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.175460.4 |
Entrez Gene | 101203548 |
Publications ? help Back to Top | |||
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