PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.162810.1
Common NameWRKY12
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 313aa    MW: 34382.8 Da    PI: 9.3615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.162810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28145205160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +Cpvk+kv+rs e+p +++ tYeg+Hnh+k
  Cucsa.162810.1 145 VKDGYQWRKYGQKVTKDNPSPRAYYKCSFApTCPVKRKVQRSVEEPCYLVATYEGQHNHPK 205
                     58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.716140206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-28141206IPR003657WRKY domain
SuperFamilySSF1182905.89E-25142206IPR003657WRKY domain
SMARTSM007748.5E-32145205IPR003657WRKY domain
PfamPF031068.5E-23146204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEPTSTTINT SLDLNFNPPA DQPHPPTPNS PLKQQAPTGI LAEKLNRISS ENKKLNQMLG  60
VVVENYSVLK NQVIDLIMKT RKRKAAPGCD NCCNFNRSAS SDQYCGCCSD DNDSCYNKRP  120
RENNSKPKVM RVLVPTPVSD STLIVKDGYQ WRKYGQKVTK DNPSPRAYYK CSFAPTCPVK  180
RKVQRSVEEP CYLVATYEGQ HNHPKPNSGI EYQLIGPINL GSNTKLDSSN VTSSPSSSIK  240
SPSSSSLMPS MSFDHLTKSQ PQIRSPSSSN SSSSTQKLLV QQMATLLTRD PNFTRALATA  300
ITGNMVDSEI WG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191442061677Probable WRKY transcription factor 4
2lex_A4e-191442061677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840140.0GU984014.1 Cucumis sativus WRKY protein (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267528.10.0probable WRKY transcription factor 40-like
TrEMBLE7CEW30.0E7CEW3_CUCSA; WRKY protein
STRINGXP_004138703.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3140822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-63WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]