PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.160570.1

Common Name

Csa_2G370470, LOC101206820

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 648aa MW: 68905.9 Da PI: 8.4093

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.160570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	199	243	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed+ l avk+ G g+W+ I r + Rt+ q+ rw Cucsa.160570.1 199 RKPWSEAEDLELMAAVKKCGEGNWANIIRgdFLS-DRTASQLSQRW 243 789**********************995521344.66666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.979	194	251	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-14	195	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.33E-12	196	247	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-8	198	249	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-5	199	243	IPR001005	SANT/Myb domain
CDD	cd11660	2.37E-13	200	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MKLKKQSVTE KDFSSLLRRY SPTTVLALLQ EVAQAPDAKI DWNDLVKNTS TGISNPREYQ 60 MLWRHLAYRH ALLDDLEDEK APLEDDSDLE CDLEPFPSVS CETLTEAAAC AKVFISSGSP 120 SDLNVPNSSI IEAPLTISLP RSYTDGVQFE NVDPACSVKG AIITVPVSVQ RQPVLAPPSA 180 EGLNTNGPTY GNNASRRKRK PWSEAEDLEL MAAVKKCGEG NWANIIRGDF LSDRTASQLS 240 QRWAIIKKKH GNLNVGVNTA GTQLSEVQLA ARHAMSVALG RHVGSLKARI NGSASTSTIG 300 NGSSLTTVAT SEQVQDKLHQ SPTHAKPSSI GSSSLTAKTQ VTTSKKMVPK SSFDSDCIVR 360 AAAVAAGARI ASPADAASLL KAAQSKNAIH IMAKVPASTK TLTPGRGPSH LEAHPSIKLP 420 TLSTTPTVVP SRGGPLKITS PTTAKLSSVQ TDQNTAVASA TASTASATDQ NTAVASTASA 480 DSLSEKEIKI AEEIRGRSLA GVQATSQKGE HCLSKQSLSG RVQQEKPADL GPPFKRQSSG 540 RVQEEKPAEL GPPLKRQATE TSNCSSSSQN MPMADGNTKV ETCNQAEERQ KSNANMVTGS 600 SDQQGIMNQS QVERAEPQDM DINSDGKDRP ITKTDRCSEN SRHKEAAX

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MKLKKQSVTE KDFSSLLRRY SPTTVLALLQ EVAQAPDAKI DWNDLVKNTS TGISNPREYQ  60
MLWRHLAYRH ALLDDLEDEK APLEDDSDLE CDLEPFPSVS CETLTEAAAC AKVFISSGSP  120
SDLNVPNSSI IEAPLTISLP RSYTDGVQFE NVDPACSVKG AIITVPVSVQ RQPVLAPPSA  180
EGLNTNGPTY GNNASRRKRK PWSEAEDLEL MAAVKKCGEG NWANIIRGDF LSDRTASQLS  240
QRWAIIKKKH GNLNVGVNTA GTQLSEVQLA ARHAMSVALG RHVGSLKARI NGSASTSTIG  300
NGSSLTTVAT SEQVQDKLHQ SPTHAKPSSI GSSSLTAKTQ VTTSKKMVPK SSFDSDCIVR  360
AAAVAAGARI ASPADAASLL KAAQSKNAIH IMAKVPASTK TLTPGRGPSH LEAHPSIKLP  420
TLSTTPTVVP SRGGPLKITS PTTAKLSSVQ TDQNTAVASA TASTASATDQ NTAVASTASA  480
DSLSEKEIKI AEEIRGRSLA GVQATSQKGE HCLSKQSLSG RVQQEKPADL GPPFKRQSSG  540
RVQEEKPAEL GPPLKRQATE TSNCSSSSQN MPMADGNTKV ETCNQAEERQ KSNANMVTGS  600
SDQQGIMNQS QVERAEPQDM DINSDGKDRP ITKTDRCSEN SRHKEAAX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152740.1	0.0	PREDICTED: uncharacterized protein LOC101206820 isoform X1
TrEMBL	A0A0A0LLS9	0.0	A0A0A0LLS9_CUCSA; Uncharacterized protein
STRING	XP_004152740.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-71	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.160570.1
Entrez Gene	101206820

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]