PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.159620.1

Common Name

Csa_2G364580, LOC101213154

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 348aa MW: 37386.3 Da PI: 6.9169

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.159620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.7	8.8e-70	114	271	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.......kskkqsalss 88 +g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerqqq aa+++++++++ ++skr re+ + ++sa+++ Cucsa.159620.1 114 AGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQHQQQQEQfrGGDNSKRLRETqtataiaAAPTASASAC 208 6899***************************************************99999998665566666666522222211222222233 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +l+s + + le +++P+ev+s+avfrcv+vs++dd++ee+aYqtav+igGhvfkGiLydqG+e Cucsa.159620.1 209 PRLPSIT--SGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPE 271 3333332..3455666*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.8E-68	116	271	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.5E-27	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.9E-27	222	270	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAGFFYLGGG REGPPNKQEE DEEEREQNLF LYRNDQEIYN KGFEIWPQQY NNNNNHQHQQ 60 PNPSLPNHLS FGVGPSRRSF MINDPSDEPS RSAFTLMRPA AAAFAAAAAS AATAGGMNCQ 120 DCGNQAKKDC AYLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQIAAL QHQQQQEQFR 180 GGDNSKRLRE TQTATAIAAA PTASASACPR LPSITSGLEL AQFPSEVNSP AVFRCVKVSA 240 MDDADEEFAY QTAVNIGGHV FKGILYDQGP ELRYTAAGES SSGHGGDGST HPLNLIAGPT 300 STSTSAATST NPAAASASTA PLLDPSIYPA PLNAFMAGTQ FFPPSRS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAGFFYLGGG REGPPNKQEE DEEEREQNLF LYRNDQEIYN KGFEIWPQQY NNNNNHQHQQ  60
PNPSLPNHLS FGVGPSRRSF MINDPSDEPS RSAFTLMRPA AAAFAAAAAS AATAGGMNCQ  120
DCGNQAKKDC AYLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQIAAL QHQQQQEQFR  180
GGDNSKRLRE TQTATAIAAA PTASASACPR LPSITSGLEL AQFPSEVNSP AVFRCVKVSA  240
MDDADEEFAY QTAVNIGGHV FKGILYDQGP ELRYTAAGES SSGHGGDGST HPLNLIAGPT  300
STSTSAATST NPAAASASTA PLLDPSIYPA PLNAFMAGTQ FFPPSRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152766.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	2e-88	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0A0LNQ5	0.0	A0A0A0LNQ5_CUCSA; Uncharacterized protein
STRING	XP_004173338.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-71	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Cucsa.159620.1
Entrez Gene	101213154

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]