PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.150110.1
Common NameCsa_3G630280, LOC101214735
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 125aa    MW: 14407.2 Da    PI: 7.6098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.150110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.6e-11242451
             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                    +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Cucsa.150110.1  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 42
                    9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-8245IPR016177DNA-binding domain
SMARTSM003806.9E-4259IPR001471AP2/ERF domain
PfamPF008471.3E-5244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-7351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGSQ EEAAHLYDRA AFMCGREPNF ELPEEEKQEL  60
RKFNWDEFLA MTRNTITNRK QKRLSPESKK SELSSPGNDD SNKRHDKFID PSFLEDVEPV  120
ASTS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818295e-58LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBankLN7132585e-58LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651657.11e-88PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_011651658.11e-88PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X3
SwissprotQ56XP92e-40ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0A0LCE76e-87A0A0A0LCE7_CUCSA; Uncharacterized protein
STRINGXP_004166807.11e-87(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-42ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]