PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143220.1
Common NameCsa_1G612900, LOC101210347
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family EIL
Protein Properties Length: 604aa    MW: 67703.7 Da    PI: 5.2804
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3430.71.4e-131404081348
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     e+l++rmwkd+++lkr+ker+k    +++ a++++k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++raWW
  Cucsa.143220.1  40 EDLERRMWKDRIKLKRIKEREKIA--AQQ-AAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWW 131
                     89*****************99964..455.599************************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fd+ngpaai+ky+a++l+ ++++++   + ++++ l++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWP+G+e+ww +lgls+  
  Cucsa.143220.1 132 KEKVKFDKNGPAAITKYEAECLAKGEADGN--GNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLSHGN 224
                     ***********************9988888..5799999*****************************************************999 PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.......XXXX.XXXXXXXX CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.......slrk.qspkvtls 277
                     + ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++rqsk+lqdkm+akes+++l vl++ee+++++ s+++         +r   +++  +s
  Cucsa.143220.1 225 S-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIQQPSSDNGasgitetPVRGhVEKQAAAS 318
                     9.9**********************************************************************4445677764443467888999 PP

                     XXXXXXXXXXXXXX.XXXXXXXXXX....................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXX CS
            EIN3 278 ceqkedvegkkeskikhvqavktta....................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadkns 348
                     +e+++dv+  ++   + +++++++                     +++  ++rk++++ + k  + ++    q+++ ++ e++++  d n+
  Cucsa.143220.1 319 SESDYDVDLADDGVGSVSSKEDRRPrsvevepssnlpnnsqpadgKEQGEKQRKRHRGGRIKPAN-RTLAPSQNAEEPSVEPRNTQLDINH 408
                     999*****554444444444443335677788888999999997655555555555555555443.3567777777777777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.6E-12740287No hitNo description
Gene3DG3DSA:1.10.3180.109.2E-72163295IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.28E-62168290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MENIMMVDDA LGDCSDMEVD DIRCDNIAEK DVSDEEIDAE DLERRMWKDR IKLKRIKERE  60
KIAAQQAAEK QKPKQTSDQA RRKKMSRAQD GILKYMLKLM EVCKARGFVY GIIPEKGKPV  120
SGASDNIRAW WKEKVKFDKN GPAAITKYEA ECLAKGEADG NGNGNSQSVL QDLQDATLGS  180
LLSSLMQHCD PPQRKYPLEK GVPPPWWPSG NEDWWVKLGL SHGNSPPYKK PHDLKKMWKV  240
GVLTAVIKHM SPDIAKIRRH VRQSKCLQDK MTAKESAIWL GVLSREESLI QQPSSDNGAS  300
GITETPVRGH VEKQAAASSE SDYDVDLADD GVGSVSSKED RRPRSVEVEP SSNLPNNSQP  360
ADGKEQGEKQ RKRHRGGRIK PANRTLAPSQ NAEEPSVEPR NTQLDINHSN VPLDRFEIPG  420
NQQQQDIATA LRPLEKDLDV QSEIPDPQLF NMFSAPSSDN VNIISTQSMF VDGRPLLYPV  480
MQNSEMQHEN AYNIYNPSVE YRSNFDVQHS QFVNEPQMRL EEGGVHIPTQ HRNNETIAGE  540
LNYVKETFNA KQDRPVDPQF GSPINSLSLD YGAFNSPFHL GIDGASSFDD FLVDDDLIQY  600
FGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-761672989140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660117.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0A0M2Q50.0A0A0A0M2Q5_CUCSA; Uncharacterized protein
STRINGXP_004154618.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  5. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  6. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  7. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]