PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.139730.1
Common NameCsa_6G169310, LOC101209621
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 301aa    MW: 34757.4 Da    PI: 8.2498
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.139730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.2e-35151052101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+ +++++sw+++g sfvv+++ efa+++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF+++ F +gk++ll++
  Cucsa.139730.1  15 FLTKTYEMVDDPMTNSIVSWNQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQ---------WEFANEGFIRGKTHLLKS 100
                     9***************************************************************9988.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Cucsa.139730.1 101 IHRRK 105
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.9E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGSEGSSTG APPPFLTKTY EMVDDPMTNS IVSWNQSGFS FVVWNPPEFA QELLPIYFKH  60
NNFSSFVRQL NTYGFRKIDR EQWEFANEGF IRGKTHLLKS IHRRKPIYSH SQSSQGNGGA  120
PLSEQERHEL EQKIKTLYQE KTNLQSQLQK HENEKEQIGH QIQRICEKLW RMGNQQKQLI  180
GILGAELEKN EHRKKRKIGK VNEFLVEELT EFEKDNLKKK KVNVPPLELL GKLELSLGLC  240
EDLLSNVGQV LKEGKEMEVK KEGEMRSGVN DVFWEHFLTE IPGSSNVTQV HLDRRNNVVR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25110412129Heat shock factor protein 1
5d5v_B2e-25110412129Heat shock factor protein 1
5d5v_D2e-25110412129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143229.10.0PREDICTED: heat stress transcription factor A-4d
TrEMBLA0A0A0KBI10.0A0A0A0KBI1_CUCSA; Uncharacterized protein
STRINGXP_004162154.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2467433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-57heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]