PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.139290.1

Common Name

Csa_6G185260

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 668aa MW: 72566.9 Da PI: 6.6841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.139290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.6e-07	259	279	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Cucsa.139290.1 259 PCPEFRK-GTCRQGDACEYAHG 279 8****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	3.11E-13	56	134	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.175	59	134	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0049	59	89	IPR002110	Ankyrin repeat
Pfam	PF12796	8.1E-7	59	126	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-14	60	139	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.36E-12	61	158	No hit	No description
PROSITE profile	PS50088	11.648	94	129	IPR002110	Ankyrin repeat
SMART	SM00248	0.23	94	126	IPR002110	Ankyrin repeat
SMART	SM00356	5.4E-5	254	280	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	259	279	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.784	259	281	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-4	287	317	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	30	289	312	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.103	289	313	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MDGGFKRGGL GFCISVLLEF SATDDLIGFR SAVEEDGHDI DEASLWYGRI FGSKKMGYEE 60 RTPLMVAAMF GSLNVLSYIL HSGRVDVNRA CGSDGVTTLH CAVAGGSAVV DQVVKLLLDA 120 SADVSAVDAN GNRPGDLIAP DFTSAFYSRK KTLQQLLNGH EGLSSSEAIF YERETLEPLE 180 LSTLRASRDG TEKKEYPVDL SLPDIKNGIY STDEFRMYTF KIKPCTRAYS HDWTECPFVH 240 PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDACEYAHGI FECWLHPAQY RTRLCKDETG 300 CTRKVCFFAH KPEELRPLYA STGSAVLSPR SICGSSLDIA SISSLTLGSP SALIPPSSTP 360 PLTPSGVSSP MGGTMWQTQC NIAPPTLHLP GSRLKASLSA RDVDLDVELL GLESQRRRQQ 420 QLMDEMSCLS SPSRWNNGLP TPASFPSPRS RNGELNGLGG MKQTNLEDFF GSVDPAILPQ 480 LQGLSLDSVG SQVQSPSGIQ MRQSLNQSFL SSYGNSIGSP PPRLSQPSVS TAASVLSSRA 540 AAFAKRSQSF IERSMVSRHT GLSPPGTSTT AMPLNLSDWG SPDGKLDWGI RGEELNKLKK 600 SASFGIRNNC TSSPVTSTMH TTAPEPDVSW VQSLVKDAPS ENAVQLKYCI QSTINQIWAE 660 EMFLPIP*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MDGGFKRGGL GFCISVLLEF SATDDLIGFR SAVEEDGHDI DEASLWYGRI FGSKKMGYEE  60
RTPLMVAAMF GSLNVLSYIL HSGRVDVNRA CGSDGVTTLH CAVAGGSAVV DQVVKLLLDA  120
SADVSAVDAN GNRPGDLIAP DFTSAFYSRK KTLQQLLNGH EGLSSSEAIF YERETLEPLE  180
LSTLRASRDG TEKKEYPVDL SLPDIKNGIY STDEFRMYTF KIKPCTRAYS HDWTECPFVH  240
PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDACEYAHGI FECWLHPAQY RTRLCKDETG  300
CTRKVCFFAH KPEELRPLYA STGSAVLSPR SICGSSLDIA SISSLTLGSP SALIPPSSTP  360
PLTPSGVSSP MGGTMWQTQC NIAPPTLHLP GSRLKASLSA RDVDLDVELL GLESQRRRQQ  420
QLMDEMSCLS SPSRWNNGLP TPASFPSPRS RNGELNGLGG MKQTNLEDFF GSVDPAILPQ  480
LQGLSLDSVG SQVQSPSGIQ MRQSLNQSFL SSYGNSIGSP PPRLSQPSVS TAASVLSSRA  540
AAFAKRSQSF IERSMVSRHT GLSPPGTSTT AMPLNLSDWG SPDGKLDWGI RGEELNKLKK  600
SASFGIRNNC TSSPVTSTMH TTAPEPDVSW VQSLVKDAPS ENAVQLKYCI QSTINQIWAE  660
EMFLPIP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00566	DAP	Transfer from AT5G58620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681919	0.0	LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143161.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 66
Swissprot	Q9LUZ4	0.0	C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBL	A0A0A0KH40	0.0	A0A0A0KH40_CUCSA; Uncharacterized protein
STRING	XP_004143161.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1796	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.139290.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]