PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.139090.1
Common NameCsa_6G187960, LOC101210189
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 299aa    MW: 33326.4 Da    PI: 10.0187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.139090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-15135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   Cucsa.139090.1 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.8222580IPR017884SANT domain
SMARTSM007171.9E-82678IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-102883IPR009057Homeodomain-like
CDDcd001671.54E-62975No hitNo description
PROSITE profilePS5129420.955128184IPR017930Myb domain
SuperFamilySSF466895.23E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-18131183IPR006447Myb domain, plants
SMARTSM007172.7E-13132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-13132179IPR009057Homeodomain-like
CDDcd001671.85E-11135180No hitNo description
PfamPF002495.2E-13135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKWEMEILSS PSSLVSTMSW SSGDGKASRW TVAENKMFEN ALAIFDTDTP DRWQKVASMI  60
PGKTVGDVIR QYKELEADVS SIEAGLIPIP GYDTSQFTLD WVNSHSYDGF KQSYGLIGKR  120
SSGRSADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNDTRSPS PENKKSVSPE HATVLPRHSN PSSTVPRAAF  240
NWNQQQQHNN NGAALVFNHS NGNVFMSPGA FGVNSYAAGI RLPEHHLQKD SMLGRQCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-161895176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143146.10.0PREDICTED: transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-119DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0KC640.0A0A0A0KC64_CUCSA; Uncharacterized protein
STRINGXP_004168809.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-99Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]