PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.138770.4
Common NameCsa_6G190310
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 521aa    MW: 58151.5 Da    PI: 9.872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.138770.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07422471147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++ +E e lv+av+ lG+g+W+ +  +     k+Rt  ++k++w ++
   Cucsa.138770.4 422 RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 471
                      6799**********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.48E-7223294IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.907.0E-4227294No hitNo description
CDDcd017696.34E-4232301No hitNo description
PROSITE profilePS5129415.136417476IPR017930Myb domain
SMARTSM007171.3E-6421474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10422472IPR009057Homeodomain-like
SuperFamilySSF466892.34E-15423503IPR009057Homeodomain-like
CDDcd116602.35E-16423473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAENLKQQKT IEMECPVNEV AFSSHLKSLG RNLDGGCEIM VKDKSEKVMS GVNMAMCRSP  60
DPVVCDRNPH MWICSENGFK VPPCKDHGPQ HPCPTSQEVV VIDDDNNFGC IYPTTSRNSF  120
RTAPCIKGHR IRKILASKNW KVAAKYGVKK NKSGGYKRKF NFNKRNSFKN QRSQMNIPFK  180
KRKLFDGCFS DCNDRRIVDR ISDSNASARE TSAHGKSSLV AGQQGDSRVK LRIKSFRVPE  240
LFIEIPESAT VSSLKRTVME AMGTIIGRGI HIGVIFRGKK VRDDNKTLIQ TGISCDNQDG  300
CLGFTLEPHS SQTHSSFCHK EPPSMLPCIS TLEPINGCNP NPTMDYLGNN STLLLETHAS  360
KVNNSSESAR EPVPFPVDTA VVERSSDSKL LVTVPGMDVG ATNVVQICRK SNQFEVGHRR  420
MRRPFSVDEV EALVHAVETL GPGRWRDVKL RAFDNVKHRT YVDLKDKWKT LVHTAKISPH  480
QRRGEQVPQQ LLDRVLKAHA YWSLSSTPEN LPSSPPTKSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-45409503498Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143123.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011657146.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_011657147.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A0A0KBR70.0A0A0A0KBR7_CUCSA; Uncharacterized protein
STRINGXP_004166195.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-95TRF-like 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]