PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.138770.1 | ||||||||
Common Name | Csa_6G190310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 521aa MW: 58151.5 Da PI: 9.872 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3e-07 | 422 | 471 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ +E e lv+av+ lG+g+W+ + + k+Rt ++k++w ++ Cucsa.138770.1 422 RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 471 6799**********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.48E-7 | 223 | 294 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 7.0E-4 | 227 | 294 | No hit | No description |
CDD | cd01769 | 6.34E-4 | 232 | 301 | No hit | No description |
PROSITE profile | PS51294 | 15.136 | 417 | 476 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-6 | 421 | 474 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 422 | 472 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.34E-15 | 423 | 503 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.35E-16 | 423 | 473 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MAENLKQQKT IEMECPVNEV AFSSHLKSLG RNLDGGCEIM VKDKSEKVMS GVNMAMCRSP 60 DPVVCDRNPH MWICSENGFK VPPCKDHGPQ HPCPTSQEVV VIDDDNNFGC IYPTTSRNSF 120 RTAPCIKGHR IRKILASKNW KVAAKYGVKK NKSGGYKRKF NFNKRNSFKN QRSQMNIPFK 180 KRKLFDGCFS DCNDRRIVDR ISDSNASARE TSAHGKSSLV AGQQGDSRVK LRIKSFRVPE 240 LFIEIPESAT VSSLKRTVME AMGTIIGRGI HIGVIFRGKK VRDDNKTLIQ TGISCDNQDG 300 CLGFTLEPHS SQTHSSFCHK EPPSMLPCIS TLEPINGCNP NPTMDYLGNN STLLLETHAS 360 KVNNSSESAR EPVPFPVDTA VVERSSDSKL LVTVPGMDVG ATNVVQICRK SNQFEVGHRR 420 MRRPFSVDEV EALVHAVETL GPGRWRDVKL RAFDNVKHRT YVDLKDKWKT LVHTAKISPH 480 QRRGEQVPQQ LLDRVLKAHA YWSLSSTPEN LPSSPPTKSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 7e-45 | 409 | 503 | 4 | 98 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681919 | 0.0 | LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143123.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_011657146.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_011657147.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A0A0KBR7 | 0.0 | A0A0A0KBR7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166195.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24668 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 8e-95 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.138770.1 |
Publications ? help Back to Top | |||
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