PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.137630.1
Common NameCsa_6G405920, LOC101204084
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 328aa    MW: 36033.4 Da    PI: 5.2657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.137630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18218251134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Cucsa.137630.1 218 CLHCEVTKTPQWRAGPLGPKTLCNACGVRYKSGR 251
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-701305IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.358212248IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-15212262IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14216250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.85E-14216275No hitNo description
CDDcd002021.32E-14217274No hitNo description
PfamPF003206.3E-16218251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MIGENIAEEI DCGNFFDNIE DLLEDLDHDV DFNTNSAAFP PIWSEHSDSL PSDPVVDPVL  60
FSVNTAPDSA LSPDLCVPYD DQMEWLSNFV DDSFSGAETL TINASNLSPP SQFHISSPVS  120
VLDSSSSSSS SDEKKPLSTK DGRRGRARSK RPRPTTTFIP RTPELTSPTN SGIKVSSESE  180
NYAESCPPLP LPKKTKKIKL TFRRDQNDTL NPQGVRKCLH CEVTKTPQWR AGPLGPKTLC  240
NACGVRYKSG RLYPEYRPAA SPTFVPCLHS NSHKKVLEMR IKQVEKGVEL RAEESPAELI  300
PNTDSGIILG YIRPEKSMLN LTSTSIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149904.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0A0KDP10.0A0A0A0KDP1_CUCSA; GATA transcription factor
STRINGXP_004149904.10.0(Cucumis sativus)
STRINGXP_004158598.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-42GATA family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]