PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.131910.1
Common NameCsa_2G006070, LOC101208310
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 348aa    MW: 38566.2 Da    PI: 7.856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.131910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-0891115126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C  f   G C+ G++C+FaHg
  Cucsa.131910.1  91 FKTRMCAKFKL-GLCRNGASCNFAHG 115
                     69*********.*************9 PP
2zf-CCCH30.84.8e-10150174125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +k++lCr f+ + +C+yGdrC+F H
  Cucsa.131910.1 150 QKMKLCRKFYNGEECPYGDRCNFLH 174
                     5999*******66************ PP
3zf-CCCH42.21.4e-13237263127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  +  tG+C++Gd+C+FaHg+
  Cucsa.131910.1 237 WKTKLCTKWEITGHCPFGDKCHFAHGQ 263
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1388123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-789121IPR000571Zinc finger, CCCH-type
SMARTSM003560.002190116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.79890117IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-591115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403149177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7149176IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5149176IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-18232267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-11233268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089236264IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-8236263IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-11237263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSFNDMRASV IPPPLHSYGS NGDASGCWSQ FPRNDPFDPQ SQFEVQQPPY KRARNSEENP  60
SSPISYSNPS LNSRGQPPNA PVNKGISNIF FKTRMCAKFK LGLCRNGASC NFAHGVEDMR  120
QPPPNWQEIV GIKEDDQSVN NWNDDQKIIQ KMKLCRKFYN GEECPYGDRC NFLHEDPAKF  180
RDDSGRFRES SAISIGTTGT PLMNGNDSSS YIEPSRVTSC SVSDALRANG NVRPSFWKTK  240
LCTKWEITGH CPFGDKCHFA HGQSELQLYI GREGEVSTAA LNVKPLIVAM EASSSLTTNV  300
VPSSALPEGQ EKPSLLKWKG PKKINRIYAD WLDDLPLSPS STSKMEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139420.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT812e-98C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0A0LKX60.0A0A0A0LKX6_CUCSA; Uncharacterized protein
STRINGXP_004167349.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-93C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]