PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.127470.1 | ||||||||
Common Name | Csa_6G502700, LOC101220447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 215aa MW: 24171.3 Da PI: 7.735 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.6 | 1.1e-20 | 122 | 156 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Cucsa.127470.1 122 CANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 156 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.246 | 116 | 152 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-18 | 116 | 167 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.09E-14 | 119 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-17 | 120 | 156 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.46E-14 | 122 | 153 | No hit | No description |
Pfam | PF00320 | 2.5E-18 | 122 | 156 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 122 | 147 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMQRCGSYQC YSAGECSCNG FYGQQGTYFS MPSYNNYYET EHYSFESSSP VDCTLSLGTP 60 STRMTEYDEK RREEQHSASN FTWDLPRTKH PHSSKTTRRS SANIGSDKSN ANNGDQMFAR 120 HCANCDTTTT PLWRNGPSGP KSLCNACGIR YKKEERKAAS SGQQASSWLQ HHSHSQKAPR 180 FSHGIANELN PSVAFLTWSL NDTEQPQLYY DFTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143515.1 | 1e-161 | PREDICTED: GATA transcription factor 18-like | ||||
TrEMBL | A0A0A0KKD2 | 1e-160 | A0A0A0KKD2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160149.1 | 1e-161 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4105 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 3e-39 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.127470.1 |
Entrez Gene | 101220447 |
Publications ? help Back to Top | |||
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