PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.126810.3

Common Name

Csa_1G074970, LOC101211189

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 313aa MW: 34480.4 Da PI: 7.6922

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.126810.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	28	87	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Cucsa.126810.3 28 QQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 87 57889*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	30	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MASSSSSGII MDNNKQQDQK TQQKQQHQQE PLRCPRCDSS NTKFCYYNNY SLSQPRHFCK 60 ACKRYWTRGG TLRNVPVGGG CRKNKRLKRP TISSTTTTVT HSSSSPAPTA PDSTSSSSTS 120 CNTNPLHNIF YGSTSDLNLP FSGYDHHHHN HLQTHLNALG LGFSSPNIDH RDFNLNGFNS 180 SSLLSGYSSL FGNNNNNPSS NSTSISSLLA SKFDPNLFGN LASSQPFDDH VMGSNGGDQL 240 GLNVKDVKLE DGMKRLNWED DGHQQQNHQT DNEIVAQSND DHHNSLFANN WTSQNWHHDP 300 PNLASSITSS LI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146609.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0A0LV58	0.0	A0A0A0LV58_CUCSA; Uncharacterized protein
STRING	XP_004163442.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.126810.3
Entrez Gene	101211189

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]