PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.122170.1 | ||||||||
Common Name | Csa_1G043040, LOC101204350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 178aa MW: 19631.6 Da PI: 7.8656 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.8 | 2.6e-28 | 6 | 60 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eCl+NhAaslG++a+DGCgEf+ + ++++ a+ l+CaACgCHRnFHR+ + Cucsa.122170.1 6 SNYHYRECLRNHAASLGSYATDGCGEFTLD-DSSSPANLLHCAACGCHRNFHRKVT 60 5789*************************8.67778999***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-24 | 8 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-22 | 9 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.359 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 10 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 93 | 163 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-16 | 95 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.5E-29 | 102 | 160 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDGENSNYHY RECLRNHAAS LGSYATDGCG EFTLDDSSSP ANLLHCAACG CHRNFHRKVT 60 YIAGGGRSSA ATATDDDLMD YDRHAVVEYA AADTERSGGG SKKRFRTKFT ADQKEKMLAF 120 AEKLGWKLQR KDLDDEIERF CRSVGVTRQV FKVWMHNHKN SFSSNSASTG NASSLTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-24 | 103 | 165 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137520.1 | 1e-131 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SB61 | 7e-46 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0A0LQK4 | 1e-129 | A0A0A0LQK4_CUCSA; Zinc finger homeodomain protein SZF-HD1 | ||||
STRING | XP_004137520.1 | 1e-130 | (Cucumis sativus) | ||||
STRING | XP_004174113.1 | 1e-130 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-43 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.122170.1 |
Entrez Gene | 101204350 |
Publications ? help Back to Top | |||
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