PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.122130.3

Common Name

Csa_1G043000, LOC105434831

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 357aa MW: 40207.5 Da PI: 9.6691

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.122130.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	179	232	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cucsa.122130.3 179 PRMRWTSSLHARFIRAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 232 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-28	177	233	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-15	177	233	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	179	232	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	180	231	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLEKGIIVPD LSLQISPPKS NQSPSVDIWP QQMQVQQVDT ELSLSNNSTS AIDVSTDRFR 60 PIRGIPVYNN GLLSSSRYFN RNQQPTTSSS SMSPPPCLSF RAFQQQQDQA VGRYNGITME 120 GLRNQEQNFN HQNQNHQFVF QNQQSLHFGV SDFSSNYSNN RSRSLLMPRI QSRRNARAPR 180 MRWTSSLHAR FIRAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKQT 240 ASSGSGEEDF LPATPTPHHE ANCLLNHRRN FTNNPSSLDH PHPHLTNGIS TPSINNQSNS 300 SRRAWERSSP GSANVFGSEN QSEECYELGH PNSLMGLNLN LNSPSKELSM KHNWHN*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLEKGIIVPD LSLQISPPKS NQSPSVDIWP QQMQVQQVDT ELSLSNNSTS AIDVSTDRFR  60
PIRGIPVYNN GLLSSSRYFN RNQQPTTSSS SMSPPPCLSF RAFQQQQDQA VGRYNGITME  120
GLRNQEQNFN HQNQNHQFVF QNQQSLHFGV SDFSSNYSNN RSRSLLMPRI QSRRNARAPR  180
MRWTSSLHAR FIRAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKQT  240
ASSGSGEEDF LPATPTPHHE ANCLLNHRRN FTNNPSSLDH PHPHLTNGIS TPSINNQSNS  300
SRRAWERSSP GSANVFGSEN QSEECYELGH PNSLMGLNLN LNSPSKELSM KHNWHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650939.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X3
TrEMBL	A0A0A0LVX9	0.0	A0A0A0LVX9_CUCSA; Uncharacterized protein
STRING	XP_008467044.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-40	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.122130.3
Entrez Gene	105434831

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]