PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.119640.1 | ||||||||
Common Name | Csa_6G121970, LOC101211981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27968.9 Da PI: 7.1618 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd++l +++++G+ W+ ++r g+ R++k+c++rw++yl Cucsa.119640.1 14 RGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNYL 61 89******************88************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE el+ ++++ +G++ W+tIa++++ gRt++++k++w+ + Cucsa.119640.1 67 RGNYTNEENELICKLHQTHGNR-WSTIAAKLP-GRTDNEVKNYWNAH 111 899*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.044 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.79E-9 | 16 | 61 | No hit | No description |
SMART | SM00717 | 3.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.247 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MVRAPVVDKD GVKRGAWSLE EDQKLRAYIE KYGPWKWREV PRLAGLMRCG KSCRLRWLNY 60 LRPGLKRGNY TNEENELICK LHQTHGNRWS TIAAKLPGRT DNEVKNYWNA HLKKQVKPKT 120 ESSTKHEGKP KDLSLSHVYE AKTSKDFAEY CSSTFGILES SSCLSQQTSS SDDNFGTVIN 180 WRMEDYNIDQ LQISGYYDDF WTEPYVWDHN ETNAFSVDYG IEMFSPQQQY ETAYDHNYX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681918 | 1e-178 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
GenBank | LN713265 | 1e-178 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140052.2 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A0A0KAD1 | 1e-180 | A0A0A0KAD1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004173677.1 | 1e-180 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-53 | myb domain protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.119640.1 |
Entrez Gene | 101211981 |
Publications ? help Back to Top | |||
---|---|---|---|
|