PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.118840.1
Common NameCsa_6G133770
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 283aa    MW: 31467 Da    PI: 5.0594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.118840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20124173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+Ae+rdp        kr++lg+f+taeeAa+ +++a+ +l g
  Cucsa.118840.1 124 KFRGVRQRP-WGRWAAEVRDP-----IlrKRIWLGTFDTAEEAAAVYDRAAIELQG 173
                     89*******.**********8.....446************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-5319279IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.52E-30124180No hitNo description
SuperFamilySSF541716.28E-21124181IPR016177DNA-binding domain
PROSITE profilePS5103222.972124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-28124181IPR001471AP2/ERF domain
SMARTSM003802.0E-32124187IPR001471AP2/ERF domain
PfamPF008471.2E-12124173IPR001471AP2/ERF domain
PRINTSPR003671.6E-10125136IPR001471AP2/ERF domain
PRINTSPR003671.6E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MILTKNLPQA SYYSFRSNMS VGDMASLSGH KTNCRRKALT SGESTKPNQR LLRIIVTDAD  60
ATDSSSEDEL ILGSRTAIRR QVREITIKRY SVPDSSSPKS PVSEICKKRN PRSRRSNNSC  120
RRNKFRGVRQ RPWGRWAAEV RDPILRKRIW LGTFDTAEEA AAVYDRAAIE LQGPNAATNF  180
SGDGAVKSAV EGSSKEEEEE EEEEEGGVES RKTTAAWSPT SVLHYDSFLT PIEEMGYCGE  240
VDELGLEIGA ASLPTARRQY GGEEELGEIE LDLDYFLVDV IY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17125180662ATERF1
3gcc_A5e-17125180662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140026.21e-163PREDICTED: ethylene-responsive transcription factor ERF069-like
TrEMBLA0A0A0KB591e-177A0A0A0KB59_CUCSA; Uncharacterized protein
STRINGXP_004154556.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-16cytokinin response factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]