PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.117100.1

Common Name

Csa_2G000390, LOC101213275

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HSF

Protein Properties

Length: 290aa MW: 33827.4 Da PI: 7.8716

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.117100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.1	1.9e-35	61	152	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk+ye++ed+e++ ++swse+ +sf+v+d+++++k +LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F+ gkk+ll++ Cucsa.117100.1 61 FLKKTYEMVEDPETDPVVSWSETRKSFIVWDSHQLSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDSDK---------WEFANEGFQGGKKHLLKN 146 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikrk++ Cucsa.117100.1 147 IKRKNK 152 **87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-57	57	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.5E-38	57	150	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.62E-34	57	150	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.8E-20	61	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-31	61	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-20	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	100	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-20	112	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MILPDDDGAE TGSGESVDEK MSEVKEEEEK DEVSTAATTM NKDGVWVKPM EGLHDVGPPP 60 FLKKTYEMVE DPETDPVVSW SETRKSFIVW DSHQLSKFLL PKYFKHSNFS SFIRQLNTYG 120 FRKIDSDKWE FANEGFQGGK KHLLKNIKRK NKYNNNHKKQ QRHLGLSINN TTLEDLTKPL 180 LVETEPLQTL RTDNNILRVE MSKLREQQQD SHNQLTLVEE RVRRAESKHQ QMFYFLAKMS 240 KNPAFCRQLL QKRMLRMKME LNNGDHEFGK KMKILGIQAH QNLGLDISED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-24	50	150	11	120	Heat shock factor protein 1
5d5u_B	4e-24	59	150	27	129	Heat shock factor protein 1
5d5v_B	4e-24	59	150	27	129	Heat shock factor protein 1
5d5v_D	4e-24	59	150	27	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648602.1	0.0	PREDICTED: heat stress transcription factor A-7a isoform X2
Swissprot	P41152	1e-77	HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBL	A0A0A0LEU6	0.0	A0A0A0LEU6_CUCSA; Uncharacterized protein
STRING	XP_004157958.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10676	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54070.1	3e-67	heat shock transcription factor A9

Link Out ? help Back to Top
Phytozome	Cucsa.117100.1
Entrez Gene	101213275

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Scharf KD,Rose S,Thierfelder J,Nover L Two cDNAs for tomato heat stress transcription factors. Plant Physiol., 1993. 102(4): p. 1355-6 [PMID:8278556]